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Infection and Global Health Research Division

Research at the University of St Andrews School of Medicine

 

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Infection and Global Health Medicine Research Division recent research publications

100 (of 481 /dk/atira/pure/researchoutput/status/published available) for Infection and Global Health Division (source: University of St Andrews PURE)
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Role and perception of clinical microbiology and infectious diseases trainees during the COVID-19 crisis Kevin Bouiller, Nathan Peiffer-Smadja, Muge Cevik, Katharina Last, Ivana A Antunović, Anja Šterbenc, Maria J Lopes, Aleksandra Barac, Valentijn Schweitzer, Sarah Dellière
Future Microbiology 2022 vol. 17 pp. 411-416
Occurrence and transmission potential of asymptomatic and presymptomatic SARS-CoV-2 infections Diana Buitrago-Garcia, Aziz Mert Ipekci, Leonie Heron, Hira Imeri, Lucia Araujo-Chaveron, Ingrid Arevalo-Rodriguez, Agustín Ciapponi, Muge Cevik, Anthony Hauser, Muhammad Irfanul Alam, Kaspar Meili, Eric A. Meyerowitz, Nirmala Prajapati, Xueting Qiu, Aaron Richterman, William Gildardo Robles-Rodriguez, Shabnam Thapa, Ivan Zhelyazkov, Georgia Salanti, Nicola Low
PLoS Medicine 2022 vol. 19
A population framework for predicting the proportion of people infected by the far-field airborne transmission of SARS-CoV-2 indoors Christopher Iddon, Benjamin Jones, Patrick Sharpe, Muge Cevik, Shaun Fitzgerald
Building and Environment 2022 vol. 221
Emergence of methicillin resistance predates the clinical use of antibiotics Jesper Larsen, Claire L Raisen, Xiaoliang Ba, Nicholas J Sadgrove, Guillermo F Padilla-González, Monique S J Simmonds, Igor Loncaric, Heidrun Kerschner, Petra Apfalter, Rainer Hartl, Ariane Deplano, Stien Vandendriessche, Barbora Černá Bolfíková, Pavel Hulva, Maiken C Arendrup, Rasmus K Hare, Céline Barnadas, Marc Stegger, Raphael N Sieber, Robert L Skov, Andreas Petersen, Øystein Angen, Sophie L Rasmussen, Carmen Espinosa-Gongora, Frank M Aarestrup, Laura J Lindholm, Suvi M Nykäsenoja, Frederic Laurent, Karsten Becker, Birgit Walther, Corinna Kehrenberg, Christiane Cuny, Franziska Layer, Guido Werner, Wolfgang Witte, Ivonne Stamm, Paolo Moroni, Hannah J Jørgensen, Hermínia de Lencastre, Emilia Cercenado, Fernando García-Garrote, Stefan Börjesson, Sara Hæggman, Vincent Perreten, Christopher J Teale, Andrew S Waller, Bruno Pichon, Martin D Curran, Matthew J Ellington, John J Welch, Sharon J Peacock, David J Seilly, Fiona J E Morgan, Julian Parkhill, Nazreen F Hadjirin, Jodi A Lindsay, Matthew Holden, Giles F Edwards, Geoffrey Foster, Gavin K Paterson, Xavier Didelot, Mark A Holmes, Ewan M Harrison, Anders R Larsen
Nature 2022 vol. 602 pp. 135-141
An analysis of tax abuse, debt, and climate change risk in low- and lower-middle-income countries Marisol Lopez, Bernadette Ann-Marie O'Hare, Eilish Anne Hannah, Stephen Hall
BMJ Paediatrics Open 2022 vol. 6
Use of a molecular bacterial load assay to distinguish between active TB and post-TB lung disease Peter M. Mbelele, Wilber Sabiiti, Scott K. Heysell, Elingarami Sauli, Emmanuel A. Mpolya, Sayoki Mfinanga, Stephen Henry Gillespie, Kennedy K. Addo, Gibson Kibiki, Derek James Sloan, Stellah G. Mpagama
International Journal of Tuberculosis and Lung Disease 2022 vol. 26 pp. 276-278
Presence of optrA-mediated linezolid resistance in multiple lineages and plasmids of Enterococcus faecalis revealed by long read sequencing Martin Patrick McHugh, Kerry Andrea Pettigrew, Geoff Toner, Elham Khatamzas, Noha el Sakka, Anne Marie Karcher, Joanna Walker, Robert Weir, Danièle Meunier, Katie L. Hopkins, Neil Woodford, Kate E. Templeton, Stephen Henry Gillespie, Matthew Holden
Microbiology 2022 vol. 168
Management of the sick child Elizabeth Molyneux, Bernadette Ann-Marie O'Hare
2022 vol. 1
Detection and quantification of viable Mycobacterium tuberculosis bacilli in saline-processed stool samples by Tuberculosis Molecular Bacterial Load Assay Emmanuel Musisi, Abdul Ssesolo, Derek James Sloan, Stephen Henry Gillespie, Wilber Sabiiti
Microbiology Spectrum 2022 vol. 10
High Mycobacterium tuberculosis bacillary loads detected by tuberculosis molecular bacterial load assay in patient stool Emmanuel Musisi, Abdul Sessolo, Sylvia Kaswabuli, Josephine Zawedde, Patrick Byanyima, Shariifah Kasiinga, Ingvar Sanyu, Esther Uwimaana, Stanley Walimbwa, Joseph Ola, Willy Ssengooba, Christine Sekaggya, Moses L. Joloba, William Worodria, Laurence Huang, Stephen Henry Gillespie, Derek James Sloan, Wilber Sabiiti
Microbiology Spectrum 2022 vol. 10
Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning Sema Nickbakhsh, Joseph Hughes, Nicolaos Christofidis, Emily Griffiths, Sharif Shaaban, Jessica Enright, Katherine Smollett, Kyriaki Nomikou, Natasha Palmalux, Lily Tong, Stephen Carmichael, Vattipally B. Sreenu, Richard Orton, Emily J. Goldstein, Rachael M. Tomb, Kate Templeton, Rory N. Gunson, Ana da Silva Filipe, Catriona Milosevic, Emma Thomson, David L. Robertson, Matthew Holden, Christopher J. R. Illingworth, Alison Smith-Palmer, Martin Patrick McHugh
Scientific Reports 2022 vol. 12
Higher-income countries and global child health Bernadette Ann-Marie O'Hare, Marisol Lopez, Eilish Anne Hannah, Takondwa Chimowa, Stephen Hall
Paediatrics and Child Health 2022 vol. 32 pp. 95-100
Joint Submission to the UN Independent Expert on Foreign Debt - Current challenges to financing for development, including education. Bernadette Ann-Marie O'Hare, Tax and Education Alliance
2022
Tackling climate change - our action plan Bernadette Ann-Marie O'Hare
2022
Tax abuse – the potential for the Sustainable Development Goals Bernadette Ann-Marie O'Hare, Marisol Lopez, Bernadetta Mazimbe, Stuart William Murray, Nicholas Spencer, C Torres, Stephen Hall
PLOS Global Public Health 2022 vol. 2
The impact of government revenue on the achievement of the Sustainable Development Goals and the amplification potential of good governance Bernadette Ann-Marie O'Hare, Stephen Hall
Central European Journal of Economic Modelling and Econometrics 2022 vol. 14 pp. 109-129
De novo assembly of Plasmodium knowlesi genomes from clinical samples explain the counterintuitive intrachromosomal organization of variant SICAvar and kir multiple gene family members Peter Jacob Thorpe, Ernest D. Benavente, Susanna Campino, Muh Fauzi, Robert W. Moon, Taane G. Clark, Janet Cox-Singh
Frontiers in Genetics 2022 vol. 13
Automated Remote Pulse Oximetry System (ARPOS) David Morrison, Gayle Helane Doherty, Devesh J Dhasmana, David Cameron Christopher Harris-Birtill
Sensors 2022 vol. 21
Automated Remote Pulse Oximetry System (ARPOS) Methodology and Protocol David Morrison, Gayle Helane Doherty, Devesh J Dhasmana, David Cameron Christopher Harris-Birtill
2022
Indirect protection by reducing transmission Aaron Richterman, Eric A Meyerowitz, Muge Cevik
Open Forum Infectious Diseases 2022 vol. 9
SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway Brian J. Willett, Joe Grove, Oscar A. MacLean, Craig Wilkie, Giuditta De Lorenzo, Wilhelm Furnon, Diego Cantoni, Sam Scott, Nicola Logan, Shirin Ashraf, Maria Manali, Agnieszka Szemiel, Vanessa Cowton, Elen Vink, William T. Harvey, Chris Davis, Patawee Asamaphan, Katherine Smollett, Lily Tong, Richard Orton, Joseph Hughes, Poppy Holland, Vanessa Silva, David J. Pascall, Kathryn Puxty, Ana da Silva Filipe, Gonzalo Yebra, Sharif Shaaban, Matthew Holden, Rute Maria Pinto, Rory Gunson, Kate Templeton, Pablo R. Murcia, Arvind H. Patel, Paul Klenerman, Susanna Dunachie, John Haughney, David L. Robertson, Massimo Palmarini, Surajit Ray, Emma C. Thomson
Nature Microbiology 2022 vol. First Online
Extracting and classifying salient fields of view from microscopy slides of tuberculosis bacteria Oggie Arandelovic, Evelin Dombay, Wilber Sabiiti, Derek James Sloan
2022 pp. 146–157
Tuberculosis bacteria detection and counting in fluorescence microscopy images using a multi-stage deep learning pipeline Oggie Arandelovic, Wilber Sabiiti, Derek James Sloan
Information 2022 vol. 13
Aspirin in patients admitted to hospital with COVID-19 (RECOVERY) Devesh J Dhasmana
Lancet 2022 vol. 399 pp. 143-151
Casirivimab and imdevimab in patients admitted to hospital with COVID-19 (RECOVERY) Devesh J Dhasmana
The Lancet 2022 vol. 399 pp. 665-676
Effect of noninvasive respiratory strategies on intubation or mortality among patients with acute hypoxemic respiratory failure and COVID-19 Gavin D Perkins, Chen Ji, Bronwen A Connolly, Keith Couper, Ranjit Lall, J Kenneth Baillie, Judy M Bradley, Paul Dark, Chirag Dave, Anthony De Soyza, Anna V Dennis, Anne Devrell, Sara Fairbairn, Hakim Ghani, Ellen A Gorman, Christopher A Green, Nicholas Hart, Siew Wan Hee, Zoe Kimbley, Shyam Madathil, Nicola McGowan, Benjamin Messer, Jay Naisbitt, Chloe Norman, Dhruv Parekh, Emma M Parkin, Jaimin Patel, Scott E Regan, Clare Ross, Anthony J Rostron, Mohammad Saim, Anita K Simonds, Emma Skilton, Nigel Stallard, Michael Steiner, Rama Vancheeswaran, Joyce Yeung, Daniel F McAuley, Devesh J Dhasmana
JAMA - Journal of the American Medical Association 2022 vol. 327 pp. 546-558
Essential features of an interstitial lung disease multidisciplinary meeting Alan K Y Teoh, Anne E Holland, Julie Morisset, Kevin R Flaherty, Athol U Wells, Simon L F Walsh, Ian Glaspole, Wim A Wuyts, Tamera J Corte, Devesh J Dhasmana
Annals of the American Thoracic Society 2022 vol. 19 pp. 66-73
Protection against SARS-CoV-2 after Covid-19 vaccination and previous infection Victoria Hall, Sarah Foulkes, Ferdinando Insalata, Peter Kirwan, Ayoub Saei, Ana Atti, Edgar Wellington, Jameel Khawam, Katie Munro, Michelle Cole, Caio Tranquillini, Andrew Taylor-Kerr, Nipunadi Hettiarachchi, Davina Calbraith, Noshin Sajedi, Iain Milligan, Yrene Themistocleous, Diane Corrigan, Lisa Cromey, Lesley Price, Sally Stewart, Elen de Lacy, Chris Norman, Ezra Linley, Ashley D Otter, Amanda Semper, Jacqueline Hewson, Silvia D'Arcangelo, Meera Chand, Colin S Brown, Tim Brooks, Jasmin Islam, Andre Charlett, Susan Hopkins, Devesh J Dhasmana
New England Journal of Medicine 2022 vol. 386 pp. 1207-1220
Cataract surgery redesign Kim Lawrence Ah-See, Andrew Blaikie, Natalie Boyle, Jonathan Foulds, Catherine Wheeldon, Peter Wilson, Caroline Styles, Shona Sutherland, Roshini Sanders
Clinical Ophthalmology 2021 vol. 15 pp. 289—297
Eyecare education in times of COVID-19 Martin Anderson, Karsten Paust, Andrew Blaikie
Eye News 2021 vol. 27
Will Africans take COVID-19 vaccination? AbdulAzeez A Anjorin, Ismail A Odetokun, Ajibola I Abioye, Hager Elnadi, Mfon Valencia Umoren, Bamu F Damaris, Joseph Eyedo, Haruna I Umar, Jean B Nyandwi, Mena M Abdalla, Sodiq O Tijani, Kwame S Awiagah, Gbolahan A Idowu, Sifeuh N Achille Fabrice, Aala M O Maisara, Youssef Razouqi, Zuhal E Mhgoob, Salim Parker, Osaretin E Asowata, Ismail O Adesanya, Maureen A Obara, Shameem Jaumdally, Taofik A Okuneye, Kennedy M Mbanzulu, Hajj Daitoni, Ezekiel F Hallie, Rasha Mosbah, Folorunso O Fasina
PLoS ONE 2021 vol. 16
Human papillomavirus detection by whole-genome next-generation sequencing Laila Sara Arroyo Mühr, Kate Cuschieri, Karin Sundström
Viruses 2021 vol. 13
Protocol for an interdisciplinary cross-sectional study investigating the social, biological and community-level drivers of antimicrobial resistance (AMR) Benon Asiimwe, John Kiiru, Stephen Mshana, Stella Neema, Katherine Lisa Keenan, Mike Kesby, Joseph R. Mwanga, Derek James Sloan, Blandina T. Mmbaga, V Anne Smith, Stephen Henry Gillespie, Andy Lynch, Alison Fiona Sandeman, John Stelling, Alison Elliott, David M. Aanensen, Gibson E. Kibiki, Wilber Sabiiti, Matthew Holden,
BMJ Open 2021 vol. 11
Comparative evaluation of a low-cost solar powered otoscope with a traditional device among health care workers in Malawi Katharine Balfour, Amy McCarthy, Shi Ying Hey, Obaid Kousha, Emmanuel Singano, Wakisa Mulwafu, David F. D. L. Walker, Andrew Blaikie
Laryngoscope Investigative Otolaryngology 2021 vol. 6 pp. 839-843
Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405 Janine T. Bossé, Yanwen Li, Liza Miriam Cohen, Marc Stegger, Øystein Angen, Sonia Lacouture, Marcelo Gottschalk, Liancheng Lei, Miriam Koene, Peter Kuhnert, Aloka B. Bandara, Thomas J. Inzana, Matthew Holden, David Harris, Olusegun Oshota, Duncan J. Maskell, Alexander W. Tucker, Brendan W. Wren, Andrew N. Rycroft, Paul R. Langford,
Microbial Genomics 2021 vol. 7
Rationally designed mariner vectors for functional genomic analysis of Actinobacillus pleuropneumoniae and other Pasteurellaceae species by transposon-directed insertion-site sequencing (TraDIS) Janine T. Bossé, Yanwen Li, Leon G. Leanse, Liqing Zhou, Roy R. Chaudhuri, Sarah E. Peters, Jinhong Wang, Gareth A. Maglennon, Matthew Holden, Duncan J. Maskell, Alexander W. Tucker, Brendan W. Wren, Andrew N. Rycroft, Paul R. Langford, Alexander W. (. Dan) Tucker, Lucy A. Weinert, Jinhong (. Tracy) Wang, Shi-Lu Luan, Jessica Beddow, Jon Cuccui, Vanessa S. Terra, on behalf of the BRaDP1T consortium
Animal Diseases 2021 vol. 1
COVID-19 vaccines Muge Cevik, Nathan D. Grubaugh, Akiko Iwasaki, Peter Openshaw
Cell 2021
Gender disparities in coronavirus disease 2019 clinical trial leadership Muge Cevik, Syed Arefinul Haque, Jennifer Manne-Goehler, Krutika Kuppalli, Paul E Sax, Maimuna S Majumder, Chloe Orkin
Clinical Microbiology and Infection 2021 vol. 27 pp. 1007-1010
Networks of SARS-CoV-2 transmission Muge Cevik, Stefan D. Baral
Science 2021 pp. 162-163
Prevalence of asymptomatic SARS-CoV-2 infection Muge Cevik, Isaac I. Bogoch, Gail Carson, Eric D’Ortenzio, Krutika Kuppalli
Annals of Internal Medicine 2021 vol. 174 pp. 283-284
SARS-CoV-2 variants and considerations of inferring causality on disease severity Muge Cevik, Sharmistha Mishra
The Lancet Infectious Diseases 2021
SARS-CoV-2, SARS-CoV, and MERS-CoV viral load dynamics, duration of viral shedding, and infectiousness Muge Cevik, Matthew Tate, Ollie Lloyd, Alberto Enrico Maraolo, Jenna Schafers, Antonia Ho
The Lancet Microbe 2021 vol. 2 pp. e13-e22
Support for self-isolation is critical in covid-19 response Muge Cevik, Stefan D. Baral, Alex Crozier, Jackie A. Cassell
British Medical Journal 2021 vol. 372
Cataract risk stratification and prioritisation protocol in the COVID-19 era Kelvin Cheng, Martin Anderson, S. Velissaris, Robert Berkeley Reynolds Moreton, Ahmed Al-Mansour, Roshini Sanders, Shona Sutherland, Peter Wilson, Andrew Blaikie
BMC Health Services Research 2021 vol. 21
Genomic surveillance of Acinetobacter baumannii in the Philippines, 2013-2014 J Chilam, S Argimon, MT Limas, ML Masim, JM Gayeta, ML Lagrada, AM Olorosa, V Cohen, LT Hernandez, B Jeffrey, K Abudahab, CM Hufano, SB Sia, Matthew Holden, J Stelling, DM Aanensen, CC Carlos,
Western Pacific Surveillance and Response Journal 2021 vol. 12
Expect the unexpected – implications for next phase of COVID-19 response Sarah Clifford, Muge Cevik, Robyn Campbell, Dàire O’Shea, Rebecca Sutherland
Infection Prevention in Practice 2021 vol. 3
Evaluation of the molecular detection of ciprofloxacin resistance in Neisseria gonorrhoeae by the ResistancePlus GC assay (SpeeDx) Seb Cotton, Martin Patrick McHugh, Michelle Etherson, Jill Shepherd, Kate E Templeton
Diagnostic microbiology and infectious disease 2021 vol. 99
Pan-resistome characterization of uropathogenic Escherichia coli and Klebsiella pneumoniae strains circulating in Uganda and Kenya, isolated from 2017-2018 Arun Decano, Kerry Andrea Pettigrew, Wilber Sabiiti, Derek James Sloan, Stella Neema, Joel Bazira, John Kiiru, Helen Atieno Onyango, Benon Asiimwe, Matthew Holden
Antibiotics 2021 vol. 10
Aims and challenges of building national trainee networks in clinical microbiology and infectious disease disciplines Sarah Dellière, Nathan Peiffer-Smadja, Maria João-Lopes, Muge Cevik, Maxime Pichon, Alexandre Bleibtreu, Valentijn Schweitzer, Katharina Last, Théo G Ferreira, Adrien Lemaignen, Aleksandra Barac
Future Microbiology 2021 vol. Epub ahead of print
Outcomes of COVID-19 related hospitalization among people with HIV in the ISARIC WHO Clinical Characterization Protocol (UK) Anna Maria Geretti, Alexander J Stockdale, Sophie H Kelly, Muge Cevik, Simon Collins, Laura Waters, Giovanni Villa, Annemarie Docherty, Ewen M Harrison, Lance Turtle, Peter J M Openshaw, J Kenneth Baillie, Caroline A Sabin, Malcolm G Semple
Clinical Infectious Diseases 2021 vol. 73 pp. e2095-e2106
Genomic analysis of global Staphylococcus argenteus strains reveals distinct lineages with differing virulence and antibiotic resistance gene content Cosmika Goswami, Stephen Fox, Matthew Holden, Alistair Leanord, Thomas J Evans
Frontiers in Microbiology 2021 vol. 12
The role of multidimensional poverty in antibiotic misuse Dominique LaShari Green, Katherine Lisa Keenan, Sarah Insia Huque, Mike Kesby, Martha F. Mushi, Catherine Kansiime, Benon Asiimwe, John Kiiru, Stephen Mshana, Stella Neema, Joseph R. Mwanga, Andy Lynch, Hannah Worthington, Emmanuel Olawale Olamijuwon, Mary Abed Al Ahad, Annette Aduda, Blandina T. Mmbaga, Joel Bazira, Alison Fiona Sandeman, John Stelling, Stephen Henry Gillespie, Gibson Kibiki, Wilber Sabiti, Derek James Sloan, Matthew Holden, Hatua Consortium
SSRN Electronic Journal 2021
Comparative yield of tuberculosis during active case finding 2 using GeneXpert or smear microscopy for diagnostic testing 3 in Nepal Suman Chandra Gurung, Kritika Dixit, Bhola Rai, Raghu Dhital, Puskar Raj Paudel, Shraddha Acharya, Gangaram Budhathoki, Deepak Malla, Jen W. Levy, Knut Lönnroth, Andrew Ramsay, Buddha Basnyat, Anil Thapa, Gokul Mishra, Bishal Subedi, Kashim Shah, Anil Shrestha, Maxine Caws
Tropical Medicine and Infectious Disease 2021 vol. 6
How to reduce household costs for people with tuberculosis Suman Chandra Gurung, Bhola Rai, Kritika Dixit, Eve Worrall, Puskar Raj Paudel, Raghu Dhital, Manoj Kumar Sah, Ram Narayan Pandit, Tara Prasad Aryal, Govinda Majhi, Tom Wingfield, Bertie Squire, Knut Lönnroth, Jens W Levy, Kerri Viney, Job van Rest, Andrew Ramsay, Rafaely Marcia Santos da Costa, Buddha Basnyat, Anil Thapa, Gokul Mishra, Julia Moreira Pescarini, Maxine Caws, Noemia Teixeira de Siqueira-Filha
Health Policy and Planning 2021 vol. 36 pp. 594-605
Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013-2014 Manuel C Jamoralin, Silvia Argimón, Marietta L Lagrada, Alfred S Villamin, Melissa L Masim, June M Gayeta, Karis D Boehme, Agnettah M Olorosa, Sonia B Sia, Charmian M Hufano, Victoria Cohen, Lara T Hernandez, Benjamin Jeffrey, Khalil Abudahab, John Stelling, Matthew Holden, David M Aanensenb, Celia C Carlosa
Western Pacific Surveillance and Response Journal 2021 vol. 12 pp. 17-25
The appointment system influences uptake of cataract surgical services in Rwanda Priya Morjaria, Wanjiku Mathenge, Jacqueline Ramke
International Journal of Environmental Research and Public Health 2021 vol. 18
Perspectives for systems biology in the management of tuberculosis I. Kontsevaya, C. Lange, P. Comella-Del-Barrio, C. Coarfa, A.R. DiNardo, Stephen Henry Gillespie, M. Hauptmann, C. Leschczyk, A.M. Mandalakas, A. Martinecz, M. Merker, S. Niemann, M. Reimann, O. Rzhepishevska, U.E. Schaible, K.M. Scheu, E. Schurr, P. Abel Zur Wiesch, J. Heyckendorf
European Respiratory Review 2021 vol. 30
Comparative evaluation of a new frugal binocular indirect ophthalmoscope Obaid Kousha, Sharma Ganesananthan, Bayan Shahin, John Ellis, Andrew Blaikie
Eye 2021 vol. Advance Access
Frugal retinal laser training simulation eyes Obaid Kousha, Blazej Staniszewski, Juan Lopez Ulloa, Sonali Tarafdar, John Ellis, Andrew Blaikie
Eye 2021
Mycobactericidal effect of different regimens measured by molecular bacterial load assay among people treated for multidrug-resistant tuberculosis in Tanzania Peter M. Mbelele, Emmanuel A. Mpolya, Elingarami Sauli, Bariki Mtafya, Nyanda E. Ntinginya, Kennedy K. Addo, Katharina Kreppel, Sayoki Mfinanga, Patrick P.J. Phillips, Stephen Henry Gillespie, Scott K. Heysell, Wilber Sabiiti, Stellah G. Mpagama
Journal of Clinical Microbiology 2021 vol. 59
Qualitative assessment of the impact of socioeconomic and cultural barriers on uptake and utilisation of tuberculosis diagnostic and treatment tools in East Africa Elizabeth F. Msoka, Fred Orina, Erica Sanga, Barbara Miheso, Simeon Mwanyonga, Helen Meme, Kiula Kiula, Alphonce Liyoyo, Ivan Mwebaza, Augustus Aturinde, Moses Joloba, Blandina Theophil Mmbaga, Evans Amukoye, Nyanda Elias Ntinginya, Stephen Henry Gillespie, Wilber Sabiiti
BMJ Open 2021 vol. 11
COVID-19, children and schools Alasdair Munro, Asha C Bowen, Muge Cevik
Medical Journal of Australia 2021 vol. 214 pp. 188-188.e1
Reproducibility of the ribosomal RNA synthesis ratio in sputum and association with markers of mycobacterium tuberculosis burden Emmanuel Musisi, Christian Dide-Agossou, Reem Al Mubarak, Karen Rossmassler, Abdul Wahab Ssesolo, Sylvia Kaswabuli, Patrick Byanyima, Ingvar Sanyu, Josephine Zawedde, William Worodria, Martin I Voskuil, Rada M Savic, Payam Nahid, J Lucian Davis, Laurence Huang, Camille M Moore, Nicholas D Walter
Microbiology Spectrum 2021 vol. 9
Dispensing antibiotics without prescription at the community pharmacies and accredited drug dispensing outlets in Tanzania Pendo M. Ndaki, Martha F. Mushi, Joseph R. Mwanga, Eveline T. Konje, Nyanda E. Ntinginya, Blandina T. Mmbaga, Katherine Lisa Keenan, Wilber Sabiiti, Mike Kesby, Manuel Fernando Benitez Paez, Alison Fiona Sandeman, Matthew Holden, Stephen E. Mshana,
Antibiotics 2021 vol. 10
Unlocking the health system barriers to maximise the uptake and utilisation of molecular diagnostics in low- and middle- income country setting Nyanda Elias Ntinginya, Davis Kuchaka, Fred Orina, Ivan Mwebaza, Alphonce Liyoyo, Barbara Miheso, Augustus Aturinde, Fred Njeleka, Kiula Kiula, Elizabeth F Msoka, Helen Meme, Erica Sanga, Simeon Mwanyonga, Willyhelmina Olomi, Linda Minja, Moses Joloba, Blandina Theophil Mmbaga, Evans Amukoye, Stephen Henry Gillespie, Wilber Sabiiti
BMJ Global Health 2021 vol. 6
How global tax dodging costs lives Bernadette Ann-Marie O'Hare, Kyle McNabb, Stephen Hall
The Conversation 2021
The impact of climate change on global child health - position statement Bernadette Ann-Marie O'Hare
2021
The impact of climate change on global child health in Milestones Bernadette Ann-Marie O'Hare, Haytham Ali
2021
Plasmodium knowlesi – clinical isolate genome sequencing to inform translational same-species model system for severe malaria Cyrus John Daneshvar, Janet Cox-Singh
Frontiers in Cellular and Infection Microbiology 2021 vol. 11
Clinical perspectives in integrating whole genome sequencing into the investigation of healthcare and public health outbreaks – hype or help? Stephen Henry Gillespie, Kerry A. Pettigrew, Matthew Holden
Journal of Hospital Infection 2021 vol. 109 pp. 1-9
Learning in lockdown Alison Power, Michael Sy, Maggie Hutchings, Tracey Coleman, Alla El-Awaisi, Jean Gallagher, Chulani Herath, Nichola McLarnon, Shobhana Nagraj, Veronica O'Carroll, Melissa Owens, Vikki Park, Emma Pope, P Jane Greaves, Elizabeth Anderson
British Journal of Midwifery 2021 vol. 29
Defining the role of asymptomatic and pre-symptomatic SARS-CoV-2 transmission - a living systematic review Xueting Qiu, Ali Ihsan Nergiz, Alberto Enrico Maraolo, Isaac I Bogoch, Nicola Low, Muge Cevik
Clinical Microbiology and Infection 2021 vol. 27 pp. 511-519
Cerebral Visual Impairment on the web John Ravenscroft, Helen St Clair Tracy, Andrew Blaikie
Frontiers in Communication 2021 vol. 6
Many East Africans miss out on disease diagnosis. What must be done about it Wilber Sabiiti
The Conversation 2021
Long Covid in adults discharged from UK hospitals after Covid-19 Louise Sigfrid, Thomas M Drake, Ellen Pauley, Edwin C Jesudason, Piero Olliaro, Wei Shen Lim, Annelies Gillesen, Colin Berry, David J Lowe, Joanne McPeake, Nazir Lone, Daniel Munblit, Muge Cevik, Anna Casey, Peter Bannister, Clark D Russell, Lynsey Goodwin, Antonia Ho, Lance Turtle, Margaret E O'Hara, Claire Hastie, Chloe Donohue, Rebecca G Spencer, Cara Donegan, Alison Gummery, Janet Harrison, Hayley E Hardwick, Claire E Hastie, Gail Carson, Laura Merson, J Kenneth Baillie, Peter Openshaw, Ewen M Harrison, Annemarie B Docherty, Malcolm G Semple, Janet T Scott,
The Lancet Regional Health - Europe 2021 vol. 8
What is the recovery rate and risk of long-term consequences following a diagnosis of COVID-19? A harmonised, global longitudinal observational study protocol Louise Sigfrid, Muge Cevik, Edwin Jesudason, Wei Shen Lim, Jordi Rello, John Amuasi, Fernando Bozza, Carlo Palmieri, Daniel Munblit, Jan Cato Holter, Anders Benjamin Kildal, Luis Felipe Reyes, Clark D Russell, Antonia Ho, Lance Turtle, Thomas M Drake, Anna Beltrame, Katrina Hann, Ibrahim Richard Bangura, Robert Fowler, Sulaiman Lakoh, Colin Berry, David J Lowe, Joanne McPeake, Madiha Hashmi, Anne Margarita Dyrhol-Riise, Chloe Donohue, Daniel Plotkin, Hayley Hardwick, Natalie Elkheir, Nazir I Lone, Annemarie Docherty, Ewen Harrison, J Kenneth Baille, Gail Carson, Malcolm G Semple, Janet T Scott
BMJ Open 2021 vol. 11
Population pharmacokinetics and Bayesian dose adjustment to advance TDM of anti-TB drugs Marieke G. G. Sturkenboom, Anne-Grete Märtson, Elin M. Svensson, Derek James Sloan, Kelly E. Dooley, Simone H. J. van den Elsen, Paolo Denti, Charles A. Peloquin, Rob E. Aarnoutse, Jan-Willem C. Alffenaar
Clinical Pharmacokinetics 2021
Evaluation of the molecular bacterial load assay for detecting viable Mycobacterium tuberculosis in cerebrospinal fluid before and during tuberculous meningitis treatment Hoang Thanh Hai, Wilber Sabiiti, Do Dang Anh Thu, Nguyen Hoan Phu, Stephen Henry Gillespie, Guy Thwaites, Nguyen Thuy Thuong Thuong
Tuberculosis 2021 vol. 128
A partially randomised trial of pretomanid, moxifloxacin and pyrazinamide for pulmonary TB C. D. Tweed, G. H. Wills, A. M. Crook, E. Amukoye, V. Balanag, A. Y.L. Ban, A. L.C. Bateson, M. C. Betteridge, W. Brumskine, J. Caoili, R. E. Chaisson, Muge Cevik, F. Conradie, R. Dawson, A. del Parigi, A. Diacon, D. E. Everitt, S.M. Fabiane, R. Hunt, A. I. Ismail, U. Lalloo, L. Lombard, C. Louw, M. Malahleha, T. D. McHugh, C. M. Mendel, F. Mhimbira, R. N. Moodliar, V. Nduba, A. J. Nunn, I. Sabi, M. A. Sebe, R. A. P. Selepe, S. Staples, S. Swindells, C. H. van Niekerk, E. Variava, M. Spigelman, Stephen Henry Gillespie
International Journal of Tuberculosis and Lung Disease 2021 vol. 25 pp. 305-314
The impact of COVID-19 on the delivery of interprofessional education Veronica O'Carroll, Alla El-Awaisi, Alison Power, Melissa Owens, Vikki Park, Mairi McKinley, Elizabeth S Anderson, Brigitte Loder-Fink
British Journal of Midwifery 2021 vol. 29 pp. 699-705
Ecosystem engineers drive differing microbial community composition in intertidal estuarine sediments Irene Sarah Fortune, Andrew John Blight, Patricia Browne, Morgan Hartley, Matthew Holden, David Paterson
PLoS ONE 2021 vol. 16
Self-measurement of IOP by patients with normal tension glaucoma before and after SLT Alexandra Young, Frederick Robert Burgess, Andrew Tatham
Eye 2021
Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland Ana da Silva Filipe, James G. Shepherd, Thomas Williams, Joseph Hughes, Elihu Aranday-Cortes, Patawee Asamaphan, Shirin Ashraf, Carlos Balcazar, Kirstyn Brunker, Alasdair Campbell, Stephen Carmichael, Chris Davis, Rebecca Dewar, Michael D. Gallagher, Rory Gunson, Verity Hill, Antonia Ho, Ben Jackson, Edward James, Natasha Jesudason, Natasha Johnson, E. Carol McWilliam Leitch, Kathy Li, Alasdair MacLean, Daniel Mair, David A. McAllister, John T. McCrone, Sarah E. McDonald, Martin Patrick McHugh, A. Keith Morris, Jenna Nichols, Marc Niebel, Kyriaki Nomikou, Richard J. Orton, Áine O’Toole, Massimo Palmarini, Yasmin A. Parr, Andrew Rambaut, Stefan Rooke, Sharif Shaaban, Rajiv Shah, Joshua B. Singer, Katherine Smollett, Igor Starinskij, Lily Tong, Vattipally B. Sreenu, Elizabeth Wastnedge, Matthew Holden, David L. Robertson
Nature Microbiology 2021 vol. 6 pp. 112-122
Genomic surveillance of Pseudomonas aeruginosa in the Philippines, 2013-2014 Jeremiah Chilam, Silvia Argimón, Marilyn T Limas, Melissa L Masim, June M Gayeta, Marietta L Lagrada, Agnettah M Olorosa, Victoria Cohen, Lara T Hernandez, Benjamin Jeffrey, Khalil Abudahab, Charmian M Hufano, Sonia B Sia, Matthew Holden, John Stelling, David M Aanensen, Celia C Carlos
Western Pacific Surveillance and Response Journal 2021 vol. 12 pp. 4-18
Genomic surveillance of methicillin-resistant Staphylococcus aureus in the Philippines, 
2013-2014 Melissa L Masim, Silvia Argimón, Holly O Espiritu, Mariane A Magbanua, Marietta L Lagrada, Agnettah M Olorosa, Victoria Cohen, June M Gayeta, Benjamin Jeffrey, Khalil Abudahab, Charmian M Hufano, Sonia B Sia, Matthew Holden, John Stelling, David M Aanensen, Celia C Carlos
Western Pacific Surveillance and Response Journal 2021 vol. 12 pp. 6-16
Corrigendum to Ehsan Ahmadpour, Masoud Foroutan-Rad, Hamidreza Majidiani, Sirous Mehrani Moghaddam, Kareem Hatam-Nahavandi, Seyed Abdollah Hosseini, Mohammad Taghi Rahimi, Aleksandra Barac, Salvatore Rubino, Mehdi Zarean, Alexander G. Mathioudakis, Muge Cevik
Open Forum Infectious Diseases 2020 vol. 7
Images of Roman Imperial denarii Oggie Arandelovic,
Sci 2020 vol. 2
Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines Silvia Argimón, Melissa A L Masim, June M Gayeta, Marietta L Lagrada, Polle K V Macaranas, Victoria Cohen, Marilyn T Limas, Holly O Espiritu, Janziel C Palarca, Jeremiah Chilam, Manuel C Jamoralin, Alfred S Villamin, Janice B Borlasa, Agnettah M Olorosa, Lara F T Hernandez, Karis D Boehme, Benjamin Jeffrey, Khalil Abudahab, Charmian M Hufano, Sonia B Sia, John Stelling, Matthew Holden, David M Aanensen, Celia C Carlos
Nature Communications 2020 vol. 11
Real-time monitoring of live mycobacteria with a microfluidic acoustic-Raman platform Mingzhou Chen, Bjorn Hammarstrom, Robert Hammond, Peter Glynne-Jones, Stephen Henry Gillespie, Kishan Dholakia
Communications Biology 2020 vol. 3
"Gene accordions" cause genotypic and phenotypic heterogeneity in clonal populations of Staphylococcus aureus Darya Belikova, Angelika Jochim, Jeffrey Power, Matthew Holden, Simon Heilbronner
Nature Communications 2020 vol. 11
Multicenter evaluation of the QIAstat-Dx® Respiratory Panel V2 for the detection of viral and bacterial respiratory pathogens Stefan A. Boers, Willem J.G. Melchers, Cas J.A. Peters, Marga Toonen, Martin Patrick McHugh, Kate E. Templeton, Eric C.J. Claas
Journal of Clinical Microbiology 2020 vol. 58
Draft genome sequences of the type strains of Actinobacillus indolicus (46K2C) and Actinobacillus porcinus (NM319), two NAD-dependent bacterial species found in the respiratory tract of pigs Janine T Bossé, Yanwen Li, Roberto Fernandez Crespo, Øystein Angen, Matthew Holden, Lucy A Weinert, Duncan J Maskell, Alexander W Tucker, Brendan W Wren, Andrew N Rycroft, Paul R Langford,
Microbiology Resource Announcements 2020 vol. 9
Normative data for peripapillary retinal nerve fibre layer OCT scans in patients of African descent Frederick Robert Burgess, Kazim Dhalla, Celina F. Mhina, Andrew Blaikie
Eye 2020
COVID-19 Muge Cevik, Antonia Ho
The Conversation 2020
Emergent resistance to dolutegravir among INSTI-naïve patients on first-line or second-line antiretroviral therapy Muge Cevik, Chloe Orkin, Paul E Sax
Open Forum Infectious Diseases 2020 vol. 7
Virology, transmission, and pathogenesis of SARS-CoV-2 Muge Cevik, Krutika Kuppalli, Jason Kindrachuk, Malik Peiris
British Medical Journal 2020 vol. 371
STrengthening the Reporting Of Pharmacogenetic Studies Marty Chaplin, Jamie J. Kirkham, Kerry Dwan, Derek James Sloan, Geraint Davies, Andrea L. Jorgensen
PLoS Medicine 2020 vol. 17
COVID-19 in Malawi Jessica Chaziya, Bridget Freyne, Samantha Lissauer, Maryke Nielsen, Josephine Langton, Bernadette Ann-Marie O'Hare, Liz Molyneux, Christopher Moxon, Pui-Ying Iroh Tam, Lucy Hoskyns, Henderson Masanjala, Sakina Ilepere, Memory Ngwira, Kondwani Kawaza, Daniel Mumba, Yamikani Chimalizeni, Queen Dube,
Archives of Disease in Childhood 2020 vol. Online First
Public money creation to maintain fundamental human rights during the COVID-19 pandemic Takondwa Chimowa, Stephen Hall, Bernadette Ann-Marie O'Hare
Harvard Health and Human Rights Journal 2020 vol. 22 pp. 395–397
Accuracy and consequences of using trial-of-antibiotics for TB diagnosis (ACT-TB study) Titus Henry Divala, Katherine L. Fielding, Derek James Sloan, Neil French, Marriott Nliwasa, Peter MacPherson, Chikondi Charity Kandulu, Lingstone Chiume, Sanderson Chilanga, Masiye John Ndaferankhande, Elizabeth L. Corbett
BMJ Open 2020 vol. 10

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